PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027081117.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 328aa MW: 36904.4 Da PI: 4.6902

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027081117.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.8	1.6e-15	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+++ + +tWkt+++ g++R++k+c++rw +yl XP_027081117.1 11 KGAWSKEEDQILIHYMGNHDLETWKTVSEQAGLNRCGKSCRLRWTNYL 58 79********************************************97 PP
2	Myb_DNA-binding	49.3	1.1e-15	64	107	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ ++ + +++G++ W++Ia++++ gRt++++k++w++ XP_027081117.1 64 RGEFSADEEATIISLQREHGNK-WSRIAAHLP-GRTDNDIKNFWNT 107 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MATSPENGVK KGAWSKEEDQ ILIHYMGNHD LETWKTVSEQ AGLNRCGKSC RLRWTNYLRP 60 GIKRGEFSAD EEATIISLQR EHGNKWSRIA AHLPGRTDND IKNFWNTRLK KKLLRRVINP 120 TTHKPIPDFN LLNFADQAQL LSVSDNPNLE VALANNANEL IKNQVKVLQN MLQIINPNPL 180 QYFQGNLDLY ELIQLNGFFD RTATDLALNP LQPQSMIAGF SNESPVLLNQ QQPYTSNSLP 240 FFDGETIPGP VLDDNIIHSD NICNSDYCLP SLVSAAPESS TVKQMESFYV STEAPEQYSV 300 FDALENPVDI DEACGSFWKD NFGFPADG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-53	MYB family protein