PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027081300.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 195aa MW: 21758.6 Da PI: 8.6295

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027081300.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.7	3.2e-19	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+++++ +G + Wkt+a + g++R++++c++rw++yl XP_027081300.1 15 KGAWTAEEDRKLAEYIETHGAKKWKTVATKSGLNRCGESCRLRWLNYL 62 79********************************************97 PP
2	Myb_DNA-binding	53.4	6.1e-17	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+ +++E++l+v+++k+lG++ W++Ia +++ gRt++++k++w+++l XP_027081300.1 68 KGNISPDEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113 6889****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence
MAPKQEGSAI RFCRKGAWTA EEDRKLAEYI ETHGAKKWKT VATKSGLNRC GESCRLRWLN 60 YLRPNIKKGN ISPDEEDLIV RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKKIYST 120 KITDGTTGAP AVPPPTTMAK VQVEVQATHH HESQADNAGL SFGVGDSLDD SVEGTSAMDC 180 IIKFLELDEK HPPNH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14750.1	1e-52	MYB family protein