PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027081684.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 350aa MW: 38363.5 Da PI: 7.064

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027081684.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.9	1.1e-10	102	126	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ f++ GtC+y +C+FaH+ XP_027081684.1 102 YKTKLCCKFRA-GTCPYVTNCNFAHS 126 9********.***********8 PP
2	zf-CCCH	18.6	3.3e-06	173	198	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_027081684.1 173 YKGRHCKKFYTEEGCPYGDNCTFLHD 198 78888********************7 PP
3	zf-CCCH	42.3	1.2e-13	233	258	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_027081684.1 233 WKTRICNKWELTGYCPFGSKCHFAHG 258 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MDYHRDSGFS SGNVVQVLSG SGNGVAGNWG RGSVDQAAWA TEDDYRVWNR ETSVEINSNS 60 NYDGRQSQSF SGGEPPNKKS RSSQMEDLTA SSRSKAIGKM FYKTKLCCKF RAGTCPYVTN 120 CNFAHSIEEL RKPPPNWQEI VAAHEEERAA SMEPREEFQI PSLVGGAESQ RSYKGRHCKK 180 FYTEEGCPYG DNCTFLHDEQ SKARESEAIS LGPGMGGGYA GNPTGTNLKP SNWKTRICNK 240 WELTGYCPFG SKCHFAHGAE ELHQFGGGPV ESEVPTTPSD TKQVAVPSKV VADAVVGSVT 300 PVPHSDSYHV GVPAQKLSNV IQKTGQKPHL KWKGPDKISK IYGDWIDDLE

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MDYHRDSGFS SGNVVQVLSG SGNGVAGNWG RGSVDQAAWA TEDDYRVWNR ETSVEINSNS  60
NYDGRQSQSF SGGEPPNKKS RSSQMEDLTA SSRSKAIGKM FYKTKLCCKF RAGTCPYVTN  120
CNFAHSIEEL RKPPPNWQEI VAAHEEERAA SMEPREEFQI PSLVGGAESQ RSYKGRHCKK  180
FYTEEGCPYG DNCTFLHDEQ SKARESEAIS LGPGMGGGYA GNPTGTNLKP SNWKTRICNK  240
WELTGYCPFG SKCHFAHGAE ELHQFGGGPV ESEVPTTPSD TKQVAVPSKV VADAVVGSVT  300
PVPHSDSYHV GVPAQKLSNV IQKTGQKPHL KWKGPDKISK IYGDWIDDLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-124	C3H family protein