PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027082055.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 231aa    MW: 26482.2 Da    PI: 10.1359
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027082055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.79.8e-14133222198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   +l lp +f +++  +k ++ t+tl de+ +++  k+   k++    l++GW++F  +++L +g  +vF+l++ ++f  +v 
  XP_027082055.1 133 FVKPMLQSHVTGGFWLGLPVRFSKTYL-PK-RDETVTLVDEQEEEYPTKYLAVKTG----LSGGWRGFSIEHELVDGNALVFQLIEPTKF--KVY 219
                     89*********************9994.33.5669***************656665....************************987777..888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_027082055.1 220 IIR 222
                     877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MVVSKKGALA YEERRHERLE QNKKKLEQLN LTKLSQALHS TISPKSSPMK KVKPKVARQP  60
VDPSTIRRSS RVADKPPPNY KEVPIEPLGR PRSYRYSRRD LSNRVYASDE DREYAQERAE  120
VLQSGLDPKI PSFVKPMLQS HVTGGFWLGL PVRFSKTYLP KRDETVTLVD EQEEEYPTKY  180
LAVKTGLSGG WRGFSIEHEL VDGNALVFQL IEPTKFKVYI IRVNQAEDSS N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-79B3 family protein