PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027082578.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 576aa MW: 66790.4 Da PI: 7.8896

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027082578.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.8	7.3e-23	21	108	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn+Y+ vGFsvrk++ +k r+g +t+r+++C keg++ + + + +k +rtraet+tgC+ak+ + +++ k++v +l+ eHnH+l XP_027082578.1 21 NFYNRYGLGVGFSVRKDYLNKD-RDGVVTSRRYTCCKEGFKPRYEGD-VKPKRTRAETKTGCEAKMGIILNReIMKYQVPDLVIEHNHTL 108 6***************9998.9999**********999988.9***************999989************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MEEALCPKIG MEFQSEDETY NFYNRYGLGV GFSVRKDYLN KDRDGVVTSR RYTCCKEGFK 60 PRYEGDVKPK RTRAETKTGC EAKMGIILNR EIMKYQVPDL VIEHNHTLHI SECAHMMRSQ 120 RKVSFSQGAQ AEIANDAGIS LKQSHELMGK EAGGLGNIGY TRDNLKHYLR TKREWGLKYG 180 EAGAMLRYFE EQKLENPSFF HAEQLDCEEQ ITNIFWADAS MLMDYTYFGD VVTFDTTYKT 240 NKEYRPLGVF VGFNQFRQLV IFGATLLYDE TIESFKWVFG TFVEAVCGRH PKTIFTDQDA 300 AMAAAISAVM PSTYHGLCTF HIRVNFMKHL GNYYKDGSNL PYRFAECMYE IEDKNEFIMA 360 WDAMLKEHKL ETNEWLCGIY ACRKKWAKCF MKGAWIAGMR STQLSESLNA SIKNYLKLDH 420 DLVQFFKHFN RVVDEKRYNE LRAEYHSRQK LPMLRLQQTP VLIQAASIYS PCMFVAFQNE 480 YDESTTMVIL DQKHTTMHVE YSVSHYDGGR ERRVILNPIT KDITCSCNLF EQEGILCSHA 540 LKVYDMVGTK FIPDQYVTKR WTKKARSGGS VDCKGR

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MEEALCPKIG MEFQSEDETY NFYNRYGLGV GFSVRKDYLN KDRDGVVTSR RYTCCKEGFK  60
PRYEGDVKPK RTRAETKTGC EAKMGIILNR EIMKYQVPDL VIEHNHTLHI SECAHMMRSQ  120
RKVSFSQGAQ AEIANDAGIS LKQSHELMGK EAGGLGNIGY TRDNLKHYLR TKREWGLKYG  180
EAGAMLRYFE EQKLENPSFF HAEQLDCEEQ ITNIFWADAS MLMDYTYFGD VVTFDTTYKT  240
NKEYRPLGVF VGFNQFRQLV IFGATLLYDE TIESFKWVFG TFVEAVCGRH PKTIFTDQDA  300
AMAAAISAVM PSTYHGLCTF HIRVNFMKHL GNYYKDGSNL PYRFAECMYE IEDKNEFIMA  360
WDAMLKEHKL ETNEWLCGIY ACRKKWAKCF MKGAWIAGMR STQLSESLNA SIKNYLKLDH  420
DLVQFFKHFN RVVDEKRYNE LRAEYHSRQK LPMLRLQQTP VLIQAASIYS PCMFVAFQNE  480
YDESTTMVIL DQKHTTMHVE YSVSHYDGGR ERRVILNPIT KDITCSCNLF EQEGILCSHA  540
LKVYDMVGTK FIPDQYVTKR WTKKARSGGS VDCKGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-101	FAR1 family protein