PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027082635.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 353aa MW: 39270.5 Da PI: 7.1564

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027082635.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.5	2.6e-12	12	57	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W+ eEde+l + vk+ G+++W++I ++ + Rt+k+c++rw + XP_027082635.1 12 KGPWSGEEDEILMNFVKENGPRDWSSIRSKGLLPRTGKSCRLRWVN 57 79***********************8876677********87 PP
2	Myb_DNA-binding	40.3	7.4e-13	94	134	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++eE+ +++ + lG++ W++Ia +++ gRt++++k++w XP_027082635.1 94 KFSAEEERVVLELQATLGNK-WAAIATYLP-GRTDNDVKNFWS 134 79****************.*****.*********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MERLRAQEDI KKGPWSGEED EILMNFVKEN GPRDWSSIRS KGLLPRTGKS CRLRWVNKLQ 60 PNLKKRHVKL IVPASCSFIC RTCILHIVKR RGCKFSAEEE RVVLELQATL GNKWAAIATY 120 LPGRTDNDVK NFWSTRQKRL ARILRASSQP NRAHKHTAKA PVVNEASTLQ ASVSSFNQVK 180 ETSLQCHICS CFWSENANAI NILPPPDCLN MGTAGVISGV PPAVDEHTSP PQLCIQSNNH 240 QPSVSPPFGI SFSTEQPKPA LNNLPLWQEN QDFGAELGEP NFMGALTQQE SLEVGNMAQH 300 NLGLSLDELE ATGQNFSEIN DYKDKMLTIP DTLFGDLSDD MLDNLDAVPR SSS

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MERLRAQEDI KKGPWSGEED EILMNFVKEN GPRDWSSIRS KGLLPRTGKS CRLRWVNKLQ  60
PNLKKRHVKL IVPASCSFIC RTCILHIVKR RGCKFSAEEE RVVLELQATL GNKWAAIATY  120
LPGRTDNDVK NFWSTRQKRL ARILRASSQP NRAHKHTAKA PVVNEASTLQ ASVSSFNQVK  180
ETSLQCHICS CFWSENANAI NILPPPDCLN MGTAGVISGV PPAVDEHTSP PQLCIQSNNH  240
QPSVSPPFGI SFSTEQPKPA LNNLPLWQEN QDFGAELGEP NFMGALTQQE SLEVGNMAQH  300
NLGLSLDELE ATGQNFSEIN DYKDKMLTIP DTLFGDLSDD MLDNLDAVPR SSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	5e-58	MYB family protein