PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027082638.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 931aa MW: 106900 Da PI: 8.8402

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027082638.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75.4	1.1e-23	62	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn Y+k +GF ++k+ k s ++g++ r+f Cs+egkr+e+ + +++ r++r+etrtgC a+l++k +k ++k++vt++++eHnH++a XP_027082638.1 62 EFYNLYGKLTGFGIKKADVKIS-QDGTVRYRKFACSREGKRHERYYNlAQRIRQPRPETRTGCLACLRIKHDKaSEKYVVTNFVKEHNHKMA 152 6**************99998.7888*************9997888999***************9*************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 931 aa Download sequence
MDREKGKNAV INLNEEDENC ESFSSSEEEF ISSETIEKNY PVDDMDEEVM NMVFDTEEDA 60 YEFYNLYGKL TGFGIKKADV KISQDGTVRY RKFACSREGK RHERYYNLAQ RIRQPRPETR 120 TGCLACLRIK HDKASEKYVV TNFVKEHNHK MASKSSIPYL WSHRHVTDAD YAQVRTMKMA 180 GVKTSQVMKF FAMQCGGYGN VGFVLKDLYN RVDKERRVLI EAGDAKNAIA YFNGRKASDK 240 SFIFEYDVDE ESRLKTLFWA DYESQLDYKC FGDVLIFDST YNVNEYHKPL VVFSGVNNHY 300 NTVVFGTALV SGESVEEYEW LLHTLTKTMG GRKPKAVITD GDKAMRRAIN NVFPDARHRL 360 CIWHLMKNAD AKAKSNVFKS MFGRMMKKAY PIGDLEEEWF AVLGKCGLRQ NKWVEKIFEM 420 RLLWAESLLR DTFFAGMRST QRCEQMNAFL KQYLKKNMRF YESVIIHELA LTHLRHTGAK 480 AVYETEDTIV VLATALQKLE KHASEVYTRN VFFRVKKHLN RQGLYDCYER KETWNGCIFF 540 LKKYADDRTW TVELNRRTLS LKCSCKKMEW KGLPCAHMFR VMLMENMQSI PKSCILKRWT 600 CEAREEADNE VLEGRQEIYA ELVQTARFGT LTSICKEMCF FASHMDDGFA RVRDIVIKET 660 NNWRRAWVER GFDCGTNGRL AADPKESRLS QYCVKDPERT RAKGDRVHTN KNKAAKCGNC 720 GLRDGHNKRT CPRNLLSYDA CGISGSQAIH YSNPGSGTMG DSRFQFGASS SGDFQGVQHP 780 FLSHSGMLNR VDRDGSSSQK IDHSQSHTMQ SPWSEWNGTG SYTIADRNSY SASFWKTKCL 840 GFRGWCDVYA TAIKNSNRQS ISGNEGESST ANLMSPKSTN GHRGAETNIE RVSMDVAQLK 900 VDMAHISNAM WKVKAGVILS LTIAFILLLK L

Sequence ? help Back to Top

Protein Sequence Length: 931 aa Download sequence

MDREKGKNAV INLNEEDENC ESFSSSEEEF ISSETIEKNY PVDDMDEEVM NMVFDTEEDA  60
YEFYNLYGKL TGFGIKKADV KISQDGTVRY RKFACSREGK RHERYYNLAQ RIRQPRPETR  120
TGCLACLRIK HDKASEKYVV TNFVKEHNHK MASKSSIPYL WSHRHVTDAD YAQVRTMKMA  180
GVKTSQVMKF FAMQCGGYGN VGFVLKDLYN RVDKERRVLI EAGDAKNAIA YFNGRKASDK  240
SFIFEYDVDE ESRLKTLFWA DYESQLDYKC FGDVLIFDST YNVNEYHKPL VVFSGVNNHY  300
NTVVFGTALV SGESVEEYEW LLHTLTKTMG GRKPKAVITD GDKAMRRAIN NVFPDARHRL  360
CIWHLMKNAD AKAKSNVFKS MFGRMMKKAY PIGDLEEEWF AVLGKCGLRQ NKWVEKIFEM  420
RLLWAESLLR DTFFAGMRST QRCEQMNAFL KQYLKKNMRF YESVIIHELA LTHLRHTGAK  480
AVYETEDTIV VLATALQKLE KHASEVYTRN VFFRVKKHLN RQGLYDCYER KETWNGCIFF  540
LKKYADDRTW TVELNRRTLS LKCSCKKMEW KGLPCAHMFR VMLMENMQSI PKSCILKRWT  600
CEAREEADNE VLEGRQEIYA ELVQTARFGT LTSICKEMCF FASHMDDGFA RVRDIVIKET  660
NNWRRAWVER GFDCGTNGRL AADPKESRLS QYCVKDPERT RAKGDRVHTN KNKAAKCGNC  720
GLRDGHNKRT CPRNLLSYDA CGISGSQAIH YSNPGSGTMG DSRFQFGASS SGDFQGVQHP  780
FLSHSGMLNR VDRDGSSSQK IDHSQSHTMQ SPWSEWNGTG SYTIADRNSY SASFWKTKCL  840
GFRGWCDVYA TAIKNSNRQS ISGNEGESST ANLMSPKSTN GHRGAETNIE RVSMDVAQLK  900
VDMAHISNAM WKVKAGVILS LTIAFILLLK L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-94	FAR1 family protein