PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027082693.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 314aa    MW: 35923.1 Da    PI: 9.1229
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027082693.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.16.2e-32102206199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_027082693.1 102 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGElGK 196
                     89***************************966778999*************************************************66699999 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_027082693.1 197 DRLFIDWRRR 206
                     9999999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MNFMAPRQPG GGGGYYEEDS SRATRPFSQP SSAAAATPQH HHHQYLQQRD LLLPPSYNHH  60
QHGDRGMIGE SLSEATAVVE LPSLISWEHY QCALIIEREH MFDKVVTPSD VGKLNRLVIP  120
KQHAEKYFPL DSSTNEKGLL LNFEDRNGKP WRFRYSYWNS SQSYVMTKGW SRFVKEKKLD  180
AGDIVSFQRG VGELGKDRLF IDWRRRPDAP DHPQLPPSMS TASFSQLLPH HQYSFRHPWN  240
HPFYLQHHQQ QQNPRDHYQL LQLNNAATGV GINNNPNPSH PHHLSNNYAY GNVMTGNPCS  300
GPFIYLRSAA AARP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-72B3 family protein