PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027082805.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 273aa MW: 30394 Da PI: 7.8292

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027082805.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.3	2.4e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++l++ +G+g +W t +++ g++R++k+c++rw++yl XP_027082805.1 14 RGPWSPEEDQILKKHLLDYGTGgNWITLPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	45.4	1.8e-14	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T+eEd l+ + ++G++ W+ Ia+ + gRt++++k++w++ XP_027082805.1 69 GPFTPEEDNLICTLYSKMGSR-WSIIASQLR-GRTDNDVKNHWNS 111 89*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MGRTPCCDKT KVKRGPWSPE EDQILKKHLL DYGTGGNWIT LPQKAGLKRC GKSCRLRWLN 60 YLRPDIKHGP FTPEEDNLIC TLYSKMGSRW SIIASQLRGR TDNDVKNHWN SKLKKKQMAA 120 SFRKPASNTT NDNSSRPASF TSTTSTTTPY SLETQAGAFH PNFSAHLSNL STEDYTDISV 180 GTEGSKVCSS SSKTIEYMSS SSQAQEDSII SESTSFGTIT NTINNSMPWL DDYGAIDRGL 240 PMEMTGTAAY SYEILSGIWP QETVLEALHD PYF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	6e-64	MYB family protein