PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027083082.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 202aa MW: 23502.1 Da PI: 10.0154

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027083082.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.2	3e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gklye+ss XP_027083082.1 9 KRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPKGKLYEFSS 59 79***********************************************96 PP
2	K-box	69.9	7.9e-24	81	171	10	100
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++a++ ++e+a L+k+ie L+++ R++lG++L+s s+ eLqq+e+qLeksl+ iRs+K+ l++e +++l++ ek l++en +Lr k+ee XP_027083082.1 81 RMEQAQHFEEEVAILRKKIEILEETRRRFLGDGLDSSSVDELQQIENQLEKSLSIIRSRKSLLFRERMDQLKEEEKILRKENAELRGKYEE 171 56789*********************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence
MARGKTQMKR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIIFSP KGKLYEFSSS 60 SATSTIERYQ KNIKNLCPSR RMEQAQHFEE EVAILRKKIE ILEETRRRFL GDGLDSSSVD 120 ELQQIENQLE KSLSIIRSRK SLLFRERMDQ LKEEEKILRK ENAELRGKYE EQQLELSISP 180 QPLPLRQVKE VETQLFIGPP KS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22950.1	1e-65	MIKC_MADS family protein