PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027083326.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 566aa MW: 63184.4 Da PI: 8.1803

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027083326.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.8e-17	57	100	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEd ll+++vk++ g++Wk+Ia+++ gRt+ qc +rwqk+l XP_027083326.1 57 WTDEEDNLLAEVVKRFNGRNWKRIAECIT-GRTDVQCLHRWQKVL 100 **************************9.**********986 PP
2	Myb_DNA-binding	65.5	1e-20	106	152	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+++++v+++G+++W+ Ia++++ gR +kqc++rw+++l XP_027083326.1 106 KGPWTKEEDERIIQLVEKFGSKRWSVIAKYLP-GRIGKQCRERWHNHL 152 79****************************.***********97 PP
3	Myb_DNA-binding	51.6	2.2e-16	158	200	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +l +++ +G++ W+ Iar ++ gRt++ +k++w+ XP_027083326.1 158 KDAWTEEEEAILSYYHQIYGNK-WAEIARFLP-GRTDNAIKNHWN 200 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence
MVEFTCCPDL MKEVGFGSCS SASDSSYDSV TPRYSSDSSF TSQTTSFSTR RSSQAGWTDE 60 EDNLLAEVVK RFNGRNWKRI AECITGRTDV QCLHRWQKVL NPELVKGPWT KEEDERIIQL 120 VEKFGSKRWS VIAKYLPGRI GKQCRERWHN HLDPAIKKDA WTEEEEAILS YYHQIYGNKW 180 AEIARFLPGR TDNAIKNHWN CSAKKKFDLN LPCCSELDSQ GSTSDGSCIT QKRTSSIEHQ 240 LLSQKVRERS DLGQERGQEN VAHVCSTELS LGNTIFHMDH LESKTHLHGT WRSSDKGVGN 300 LINSLGGFKV GGTEIVPADM HGNPSPGYAF SSAVSPDKCE RIFESPKRTR HVSGLLPNTD 360 FLSLSSYGYS KDNGQLSKKN KVCKTTPCQD HWLSSFWCYD PPQCQDLVSA ESDGIISLDN 420 HTTHSKHRLL YFTPPSLVLN ISGNSSSSPE SLLRNSAMSY KNTPSIIRKK ISREARDEAS 480 CCKNPRNTTS SSSQSKEINS TGSSKLEGTS VSNTYKSETS VVGRSLERRL DFASDREWES 540 TAVRFSTPIS ASSSALNSGG KMNLTP

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence

MVEFTCCPDL MKEVGFGSCS SASDSSYDSV TPRYSSDSSF TSQTTSFSTR RSSQAGWTDE  60
EDNLLAEVVK RFNGRNWKRI AECITGRTDV QCLHRWQKVL NPELVKGPWT KEEDERIIQL  120
VEKFGSKRWS VIAKYLPGRI GKQCRERWHN HLDPAIKKDA WTEEEEAILS YYHQIYGNKW  180
AEIARFLPGR TDNAIKNHWN CSAKKKFDLN LPCCSELDSQ GSTSDGSCIT QKRTSSIEHQ  240
LLSQKVRERS DLGQERGQEN VAHVCSTELS LGNTIFHMDH LESKTHLHGT WRSSDKGVGN  300
LINSLGGFKV GGTEIVPADM HGNPSPGYAF SSAVSPDKCE RIFESPKRTR HVSGLLPNTD  360
FLSLSSYGYS KDNGQLSKKN KVCKTTPCQD HWLSSFWCYD PPQCQDLVSA ESDGIISLDN  420
HTTHSKHRLL YFTPPSLVLN ISGNSSSSPE SLLRNSAMSY KNTPSIIRKK ISREARDEAS  480
CCKNPRNTTS SSSQSKEINS TGSSKLEGTS VSNTYKSETS VVGRSLERRL DFASDREWES  540
TAVRFSTPIS ASSSALNSGG KMNLTP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	344	349	ESPKRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	2e-77	MYB family protein