PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027083750.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 357aa MW: 40290.4 Da PI: 7.9095

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027083750.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.6e-06	195	214	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ XP_027083750.1 195 FACNICNKTFNRYNNMQMHM 214 78*****************9 PP
2	zf-C2H2	16	3.4e-05	279	301	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +CgksF k + ++H +++ XP_027083750.1 279 FNCRKCGKSFAVKGDWRTHEKNC 301 78*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MSSPKMGIRT TNCHVQDMNM CFQAAPTFIE WLKPTHESSS SSSSSSSSTL SSTQQEFLDQ 60 FTKPMSFLKL PLFYQQQEEE LAVHESIQCL PLLSQFTDTK KPLKEELDED GIGQEESIFG 120 IKGSDKVEKV TVALHIGLPD SGSASSDSET KPYNLKEKPV DNYQKSPSTD GCTFNNESRF 180 WIPTPAQILV GPMQFACNIC NKTFNRYNNM QMHMWGHGSE FRKGPESLRG AQPAAMLRLP 240 CYCCAQGCKN NINHPRAKPL KDFRTLQTHY KRKHGAKPFN CRKCGKSFAV KGDWRTHEKN 300 CGKLWYCTCG SDFKHKRSLK DHIRSFGNGH SPHPSLEGFE DEKECITGGS EDENAQY

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MSSPKMGIRT TNCHVQDMNM CFQAAPTFIE WLKPTHESSS SSSSSSSSTL SSTQQEFLDQ  60
FTKPMSFLKL PLFYQQQEEE LAVHESIQCL PLLSQFTDTK KPLKEELDED GIGQEESIFG  120
IKGSDKVEKV TVALHIGLPD SGSASSDSET KPYNLKEKPV DNYQKSPSTD GCTFNNESRF  180
WIPTPAQILV GPMQFACNIC NKTFNRYNNM QMHMWGHGSE FRKGPESLRG AQPAAMLRLP  240
CYCCAQGCKN NINHPRAKPL KDFRTLQTHY KRKHGAKPFN CRKCGKSFAV KGDWRTHEKN  300
CGKLWYCTCG SDFKHKRSLK DHIRSFGNGH SPHPSLEGFE DEKECITGGS EDENAQY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-121	C2H2 family protein