PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027083800.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 148aa    MW: 16945.3 Da    PI: 6.5448
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027083800.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.32.3e-192056137
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevav 37
                    k i++ snrqvtfskRr+g+lKKA+EL++L++aeva+
  XP_027083800.1 20 KMIDDLSNRQVTFSKRRAGLLKKASELCILTGAEVAI 56
                    6799*******************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MNNMMMKKTT TRGRKKIEIK MIDDLSNRQV TFSKRRAGLL KKASELCILT GAEVAIASSS  60
CVADRNTSLV AEIQEHNQHY AKVSEELEIE RKRKETIEGS KVENNGSFWW DEPIDNMGLE  120
ELQQYKASLE ELKKTVLIRA DDIDAVER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-22M-type_MADS family protein