PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027083853.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 275aa MW: 30530.1 Da PI: 6.2278

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027083853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	113.2	1.7e-35	43	141	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa++C+la+yfp +++k+f n+hklFG +n++k+++++++++r++am+s++ +A++ra+dPv G+++vi+++q+q++ +ael+ XP_027083853.1 43 ACAACKYHRRKCAPGCPLARYFPPDHQKQFLNAHKLFGLRNMMKVYNTVNPNDRHRAMQSMIIQANIRASDPVGGCHRVIQEMQKQIQFCRAELD 137 7********************************************************************************************99 PP DUF260 96 llke 99 l+ + XP_027083853.1 138 LVLT 141 8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MNGTNNHQDN KSKVLNNTAE PSSSNSNNTK RTTAGASTSD TRACAACKYH RRKCAPGCPL 60 ARYFPPDHQK QFLNAHKLFG LRNMMKVYNT VNPNDRHRAM QSMIIQANIR ASDPVGGCHR 120 VIQEMQKQIQ FCRAELDLVL TQLAHIHSLR SAAGTGAEEP LPNPINPGMY VAGAQSMHIQ 180 PEPEDFGGYA DLYAGHKDED IQGDINPSTS YVHLSPTPLL VDGSEDIKVL FDVYEDIKHD 240 LIESKNLNLS SEDEEPKDEV NIPKQPKQEN IEDAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-36	LBD family protein