PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027083939.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 193aa    MW: 21987.1 Da    PI: 10.2607
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027083939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.37.2e-171057249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +ie+ks+rqvtf+kRr+g++KKA+ L+   + e+ ++ fs  g++y +
  XP_027083939.1 10 KIEDKSKRQVTFTKRRQGLFKKASALCNISNYEIGIVTFSLAGNMYAW 57
                    59********************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MVRKKVDIVK IEDKSKRQVT FTKRRQGLFK KASALCNISN YEIGIVTFSL AGNMYAWGHP  60
TVDSVLQRYM AYRAQKPDEN HQENETSPGD HHQNKREMKK RLLKDLTEKA GQEKGLVLKN  120
NKNNSSNQEG EKRVEGHAAA AKSKVMASWN LPKVDDLEID ELERLMADME EMKKKVVDRA  180
NQMKSSAGRV PSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-24M-type_MADS family protein