PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027084082.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARR-B

Protein Properties

Length: 557aa MW: 61816.9 Da PI: 5.9524

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027084082.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.1	4e-28	314	367	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++ XP_027084082.1 314 SKVDWTPELHKKFVQAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 367 6899**************.******************************96 PP
2	Myb_DNA-binding	44.6	3.2e-14	316	365	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e+++++v+av+qlG + +++I + m +g+t+ ++ s++qky+ XP_027084082.1 316 VDWTPELHKKFVQAVEQLGIDqaIPSRILELMKvEGLTRHNVASHLQKYR 365 57***********************************************7 PP
3	Response_reg	34.7	9.5e-13	24	129	2	109
EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 2 livdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 l+++ + + +r le+ +y +v + + eal + +k +++ ++ ++ +++G+ +k +++++ +lp i++++++ +++ +++ +Ga XP_027084082.1 24 LLIESDACSAVEMRLKLEEMDY-IVSIFCNENEALSAISNKSecFHVAIVEVNTQNSSGI--FKFLETAN-DLPTIMISDNNCISTMMKCIALGA 114 666666666667778889**.***********999999*********995..78888877.9******************* PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 +fl Kp++ ++l + XP_027084082.1 115 VEFLQKPVSDDKLQN 129 ********99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MPAMVCTADE LLGWKDFPKG LKVLLIESDA CSAVEMRLKL EEMDYIVSIF CNENEALSAI 60 SNKSECFHVA IVEVNTQNSS GIFKFLETAN DLPTIMISDN NCISTMMKCI ALGAVEFLQK 120 PVSDDKLQNI WQHVVHKAFN AGGKDVSEAL KPVKESLISM LQLPFGNAET GKQASVEAEQ 180 ENNQDLLSGC DKYPAPSTPQ LKQGERSLDD GDCQDQANFS MEQDSAEQDG ECKSVETTCG 240 NSIFECTALG SPASGEDAVK EEHESTNCCR TEINTTTCYE GKDRPSNKTS NAAGLNRSSA 300 VRNTCGIKAS KKRSKVDWTP ELHKKFVQAV EQLGIDQAIP SRILELMKVE GLTRHNVASH 360 LQKYRMHRRH ILPKENERRW PHPGGSAQRN YYPHKPVMAF PPYHPNHTIP GGQVYPAWIP 420 PGTYTGGIHI WGSPYYPGWQ VPNESWYWKP YSMTHADAWG CPVMPQTVGS YPQFAQQTAP 480 DFQTTIEMQY TGSTLLNPSD LHAAEEVIDQ VVKEAISKPW LPLPLGLKPP STECVLNELS 540 RQGISKIPPH TKAPNIR

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MPAMVCTADE LLGWKDFPKG LKVLLIESDA CSAVEMRLKL EEMDYIVSIF CNENEALSAI  60
SNKSECFHVA IVEVNTQNSS GIFKFLETAN DLPTIMISDN NCISTMMKCI ALGAVEFLQK  120
PVSDDKLQNI WQHVVHKAFN AGGKDVSEAL KPVKESLISM LQLPFGNAET GKQASVEAEQ  180
ENNQDLLSGC DKYPAPSTPQ LKQGERSLDD GDCQDQANFS MEQDSAEQDG ECKSVETTCG  240
NSIFECTALG SPASGEDAVK EEHESTNCCR TEINTTTCYE GKDRPSNKTS NAAGLNRSSA  300
VRNTCGIKAS KKRSKVDWTP ELHKKFVQAV EQLGIDQAIP SRILELMKVE GLTRHNVASH  360
LQKYRMHRRH ILPKENERRW PHPGGSAQRN YYPHKPVMAF PPYHPNHTIP GGQVYPAWIP  420
PGTYTGGIHI WGSPYYPGWQ VPNESWYWKP YSMTHADAWG CPVMPQTVGS YPQFAQQTAP  480
DFQTTIEMQY TGSTLLNPSD LHAAEEVIDQ VVKEAISKPW LPLPLGLKPP STECVLNELS  540
RQGISKIPPH TKAPNIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-150	ARR-B family protein