PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027084147.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family BBR-BPC
Protein Properties Length: 233aa    MW: 25623.5 Da    PI: 10.5908
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027084147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind224.87.3e-6965233129301
       GAGA_bind 129 eeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCY 223
                      +  +++  ++++ ++k++  +++   a    +++ k+++kk++++kk+++++++   ++ e+k+ dlv ++ ++D s++P+P CsCtG+ r CY
  XP_027084147.1  65 LHGPTKNRFVTKPVKIKKNWPPSN--DACPSNKSRPKQPNKKPSTTKKTKRPPKV--GVNIERKNPDLVYDEAKFDFSRVPPPFCSCTGVARACY 155
                     444445555555555555555553..33334455666777778888788888875..599*********************************** PP

       GAGA_bind 224 kWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     kWG+G WqS+CC t++S+yPLP+s+ r+gaR+ grKmS+ga++klL + a+eG dls+p+DLk+hWAkHGtnkfvti+
  XP_027084147.1 156 KWGSGSWQSSCCNTNLSQYPLPMSPSRPGARVPGRKMSHGAYTKLLCRFATEGCDLSQPIDLKNHWAKHGTNKFVTIK 233
                     *****************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MVAFSKRCSM ASEVNHTEPP FPQFPGAYPG ASFSCSGFAF HPSQATQMDS KAGIAAVPIR  60
SVPPLHGPTK NRFVTKPVKI KKNWPPSNDA CPSNKSRPKQ PNKKPSTTKK TKRPPKVGVN  120
IERKNPDLVY DEAKFDFSRV PPPFCSCTGV ARACYKWGSG SWQSSCCNTN LSQYPLPMSP  180
SRPGARVPGR KMSHGAYTKL LCRFATEGCD LSQPIDLKNH WAKHGTNKFV TIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.36e-57BBR-BPC family protein