PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027084326.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 184aa    MW: 21014.7 Da    PI: 5.0087
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027084326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.90.000224601555
                    HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r N  +  L  llP +    +  l+ + ++e A++YIk+L+
  XP_027084326.1 24 RYNRQLRALSNLLPGS----KAELDEVLVVENATKYIKHLE 60
                    6688999999999998....788****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    
MDPSYATGAS KMLKDRKRQR EEKRYNRQLR ALSNLLPGSK AELDEVLVVE NATKYIKHLE  60
ERVDSLERRL DSTTGEEDEQ SSVVLSEDTK SDSDSDSSLP QILVYISLRD VIISIQCKNH  120
KNIIWETISE VEKQQLSVIS FNTMSFGRAE LVINILAKDK ETKRKIGSGF SEMAILDIPW  180
SSEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22770.19e-14bHLH family protein