PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027084333.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 187aa    MW: 21051.2 Da    PI: 6.2624
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027084333.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.88e-1372161196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+ +l++ +v+   rl lp + ++e  +k       ++ ++ g++We  +   +++++ + + GWk+Fv +n+L+ gD + F+l++ s+++ v+k
  XP_027084333.1  72 FDVILSRTHVTPPYRLNLPTRMVSELPSK---L-VPMVLTSCGKTWETFY--HGRGRGSTKRFGWKRFVIDNDLRMGDCCFFELMECSTTKIVFK 160
                     56677888888889999999999888433...2.24667789*****999..78878888999********************997688888887 PP

                     E CS
              B3  96 v 96 
                     v
  XP_027084333.1 161 V 161
                     7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MSGPLVQPVH GIVKEEPFSI LPYIDEKPCL DAMNMTSVAN RERLNFQPGS SSRTAEVDDT  60
EYYTISGTRP YFDVILSRTH VTPPYRLNLP TRMVSELPSK LVPMVLTSCG KTWETFYHGR  120
GRGSTKRFGW KRFVIDNDLR MGDCCFFELM ECSTTKIVFK VIILRGTLPL GEGAGDGDTP  180
ETAIFIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-09B3 family protein