PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027084334.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 155aa    MW: 17546.1 Da    PI: 7.9334
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027084334.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.54.9e-1340129196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+ +l++ +v+   rl lp + ++e  +k       ++ ++ g++We  +   +++++ + + GWk+Fv +n+L+ gD + F+l++ s+++ v+k
  XP_027084334.1  40 FDVILSRTHVTPPYRLNLPTRMVSELPSK---L-VPMVLTSCGKTWETFY--HGRGRGSTKRFGWKRFVIDNDLRMGDCCFFELMECSTTKIVFK 128
                     66677888888889999999999888433...2.24667789*****999..78878888999********************997788888887 PP

                     E CS
              B3  96 v 96 
                     v
  XP_027084334.1 129 V 129
                     7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    
MNMTSVANRE RLNFQPGSSS RTAEVDDTEY YTISGTRPYF DVILSRTHVT PPYRLNLPTR  60
MVSELPSKLV PMVLTSCGKT WETFYHGRGR GSTKRFGWKR FVIDNDLRMG DCCFFELMEC  120
STTKIVFKVI ILRGTLPLGE GAGDGDTPET AIFIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.13e-09B3 family protein