PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027085063.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 328aa MW: 36835.3 Da PI: 4.9364

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027085063.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.1	7.4e-17	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+++ +G +tWkt+++ g++R++k+c++rw +yl XP_027085063.1 11 KGAWSKEEDQILIHYMGNHGLETWKTVSEQAGLNRCGKSCRLRWTNYL 58 79********************************************97 PP
2	Myb_DNA-binding	49.3	1.1e-15	64	107	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E ++ +++++G++ W++Ia++++ gRt++++k++w++ XP_027085063.1 64 RGEFSADEAATIISLHREHGNK-WSRIAAHLP-GRTDNDIKNFWNT 107 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MAASPENGVK KGAWSKEEDQ ILIHYMGNHG LETWKTVSEQ AGLNRCGKSC RLRWTNYLRP 60 GIKRGEFSAD EAATIISLHR EHGNKWSRIA AHLPGRTDND IKNFWNTRLK KKLLRRVINP 120 TIHKPIPDFN LLNFADQAQL LSVSDNPNLE AALANNANEL IKNQIQVLQN MLQIINPNPL 180 QYFQGNLDLY ELIQLNGVFD RTTTDLALNP LQAQSMIAGF RNESPVLLNQ QQPYTSNSLP 240 CFDGETIPCP VLDDNIIHSD NICNSEYSLP SVVSAAPESS TVKQMESFYV STEAPEQYSV 300 FDGWENLVDI DEASGSFWKD NFGFPADG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	3e-54	MYB family protein