PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027085702.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24796.3 Da    PI: 8.2282
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027085702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.64.4e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++ rqvtfskRr+g+lKKA+ELSvLCdaeva+iifs++gkl+e+ss
  XP_027085702.1  9 KRIENSTSRQVTFSKRRKGLLKKAFELSVLCDAEVALIIFSPSGKLFEFSS 59
                    79***********************************************96 PP
2K-box67.64.1e-23901829100
           K-box   9 leeakaeslqqelakLkkeienLq.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      ++ ++ + ++e+a+L+k+ie L+ ++ R++lG++L+s s+ eL+q+e+qLeksl+ iRs+K  + +eqi++l++ ek l++en +Lr+k+ee
  XP_027085702.1  90 ETDLHTPHFEEEVANLRKKIELLEeTKRRKFLGDGLDSSSIDELEQIEHQLEKSLSIIRSRKILFSCEQINQLKEEEKILRRENAELREKYEE 182
                     4566778999**************777899************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MVRGKTQIKR IENSTSRQVT FSKRRKGLLK KAFELSVLCD AEVALIIFSP SGKLFEFSSS  60
SAASTIERYR KSIKNLRPSK RMDVEHLQSE TDLHTPHFEE EVANLRKKIE LLEETKRRKF  120
LGDGLDSSSI DELEQIEHQL EKSLSIIRSR KILFSCEQIN QLKEEEKILR RENAELREKY  180
EERQLELSIG QQFLSLEQGK EVETQLFIGL PDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-68MIKC_MADS family protein