PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027085704.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23763.3 Da    PI: 9.9967
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027085704.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.35.7e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krie+ + rqvtfskRr+g+lKKA+ELSvLCdaeva+iifs++gklye+ss
  XP_027085704.1  9 KRIEDATTRQVTFSKRRKGLLKKAFELSVLCDAEVALIIFSPSGKLYEFSS 59
                    79***********************************************96 PP
2K-box62.12.2e-21811738100
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + + +  ++ ++e+a  +k+ie L+++ R+llG++L+s s+ eLqq+e+qLe+sl+ iRs+K  l++e i++l++  k l+++n +Lr+k+ee
  XP_027085704.1  81 QMDLERLQHFEEEVAIQRKKIELLEETTRKLLGDGLDSSSIDELQQVERQLERSLSIIRSRKILLFCERINQLKEEGKILRKKNAELREKYEE 173
                     466678899*********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MARGKTQIKR IEDATTRQVT FSKRRKGLLK KAFELSVLCD AEVALIIFSP SGKLYEFSSS  60
SATSTIERYQ KSIKNRPTSK QMDLERLQHF EEEVAIQRKK IELLEETTRK LLGDGLDSSS  120
IDELQQVERQ LERSLSIIRS RKILLFCERI NQLKEEGKIL RKKNAELREK YEERQLELSI  180
GQQFSSLEQV KEVETQLFIG LPNR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-71MIKC_MADS family protein