PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027085712.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YB
Protein Properties Length: 162aa    MW: 17224.2 Da    PI: 4.8334
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027085712.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.48.6e-5830126197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflPian++rimkk+lPan+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+eplk+yl++yreleg
  XP_027085712.1  30 VREQDRFLPIANIGRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKAYLARYRELEG 124
                     69********************************************************************************************9 PP

           NF-YB  96 ek 97 
                     ++
  XP_027085712.1 125 DT 126
                     96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MAEAPPVSPG GGAGGGGVES GGEQSPQSNV REQDRFLPIA NIGRIMKKAL PANGKIAKDA  60
KDTVQECVSE FISFITSEAS DKCQKEKRKT INGDDLLWAM ATLGFEDYIE PLKAYLARYR  120
ELEGDTRVPA RGGDGASNTV GTQMGSNAEL PYTHVGYANS QV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.31e-68NF-YB family protein