PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027085770.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 210aa MW: 23515.8 Da PI: 9.6119

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027085770.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.3e-18	38	85	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv+ ++ +G g+W+++++ g+ R++k+c++rw +yl XP_027085770.1 38 RGLWSPEEDEKLVKHITAHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 85 788*******************************************97 PP
2	Myb_DNA-binding	53.8	4.3e-17	91	134	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ XP_027085770.1 91 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 134 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence
MMMTCTNECG GEGGRVGLVV ILEEGMGHHC CSKQKVKRGL WSPEEDEKLV KHITAHGHGC 60 WSSVPKLAGL QRCGKSCRLR WINYLRPDLK RGSFTEQEER TIIDVHRILG NRWAQIAKHL 120 PGRTDNEVKN FWNSVIKKKL IAQGLDPNTH NLLSPHQTKA KNNGNTISKL NSHHDQSGSV 180 FTMDTSPGNK EIIDAKSTLS LPSSYINHPH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	8e-83	MYB family protein