PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027085851.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 911aa MW: 100118 Da PI: 5.0408

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027085851.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28	5.1e-09	852	904	3	46
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 +WT+ E+e+l+++v++l ++ Wk I + g gRt ++k++w++ XP_027085851.1 852 PWTKAEEEKLKEGVQRLSSPhdrsiPWKQILEFGGdvfqRGRTTIDLKDKWRN 904 8***************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 911 aa Download sequence
MASEIPVPST VAWSWVIEAL SRSKQADTSL LIELCWHLCD SDIIKKAPEV SDDELGKNCR 60 EVVSLRILES LIVKGNQNKN KDAATVGQKL ELDPSNNCED VLRQISEMSA MDLTAVAPEM 120 LNGDVQPFIV HKRASLPKPA LQKLKDAILE GSHSILSSLK ERSGLTVTTQ CNDDIPVNGG 180 NSNVLAQRLE DCSINNRVTL PYGNAGSPTL DNMDDESPEN LPDTNLLPAK RKTAAMRSEI 240 VEIQTDGDQT TLDDCCTSHV QATKKFKQKA NFTEDTVVQN AIAPTTHGPS TTLSEGVVRY 300 IEKEGCNSKK EVQCGSSTPQ NVDDDLEGNF PESNSIPAKR NRTAIAAENS EGKTLKDQIP 360 LGDGCDIRGE VVKKFKQDGN SMMDDIDEDT VASPVHGLMK FSSEGTVKHI EKEGCNLETE 420 VQVGGVESNG SPHGDDDQHC QLKRIAQSSH AFHQDHLVCD LQVPHDNAKV AELHAELDGQ 480 NNSVDETNGH DQGFELQTEN ATSLAMGVME KNNSPENPVQ NFEGNFQLSF GGSGSKDDMQ 540 HNPDFDMTSD SDDYRDERMD IALKKDALLS SQCTYSQDSF ATQAKYCVKC NKEGQLLVCS 600 SDTCQLAVHS SCLPSAAHFD GNGKFYCPFC AYSRAISEYM QVKRKASFAR KDLASFIGVQ 660 TVCQQKKATM KLGRESRNEL QKNEGNNSED FVNKVSDSHC GVKMGNKHQS EPPLSCSSDH 720 SHSGEKVVSP SDGMPNTLVS GNLERKYMEP QCQLLGVQVE QPVVAHPVHG SDVDCKEAHM 780 ADRNEGNAGA EGKKVSEIPE SALPQEPVCG PISESSEEDN EKSVRSYSIR LRRPIKNYTF 840 PAIPQLRRKI LPWTKAEEEK LKEGVQRLSS PHDRSIPWKQ ILEFGGDVFQ RGRTTIDLKD 900 KWRNICKGGP R

Sequence ? help Back to Top

Protein Sequence Length: 911 aa Download sequence

MASEIPVPST VAWSWVIEAL SRSKQADTSL LIELCWHLCD SDIIKKAPEV SDDELGKNCR  60
EVVSLRILES LIVKGNQNKN KDAATVGQKL ELDPSNNCED VLRQISEMSA MDLTAVAPEM  120
LNGDVQPFIV HKRASLPKPA LQKLKDAILE GSHSILSSLK ERSGLTVTTQ CNDDIPVNGG  180
NSNVLAQRLE DCSINNRVTL PYGNAGSPTL DNMDDESPEN LPDTNLLPAK RKTAAMRSEI  240
VEIQTDGDQT TLDDCCTSHV QATKKFKQKA NFTEDTVVQN AIAPTTHGPS TTLSEGVVRY  300
IEKEGCNSKK EVQCGSSTPQ NVDDDLEGNF PESNSIPAKR NRTAIAAENS EGKTLKDQIP  360
LGDGCDIRGE VVKKFKQDGN SMMDDIDEDT VASPVHGLMK FSSEGTVKHI EKEGCNLETE  420
VQVGGVESNG SPHGDDDQHC QLKRIAQSSH AFHQDHLVCD LQVPHDNAKV AELHAELDGQ  480
NNSVDETNGH DQGFELQTEN ATSLAMGVME KNNSPENPVQ NFEGNFQLSF GGSGSKDDMQ  540
HNPDFDMTSD SDDYRDERMD IALKKDALLS SQCTYSQDSF ATQAKYCVKC NKEGQLLVCS  600
SDTCQLAVHS SCLPSAAHFD GNGKFYCPFC AYSRAISEYM QVKRKASFAR KDLASFIGVQ  660
TVCQQKKATM KLGRESRNEL QKNEGNNSED FVNKVSDSHC GVKMGNKHQS EPPLSCSSDH  720
SHSGEKVVSP SDGMPNTLVS GNLERKYMEP QCQLLGVQVE QPVVAHPVHG SDVDCKEAHM  780
ADRNEGNAGA EGKKVSEIPE SALPQEPVCG PISESSEEDN EKSVRSYSIR LRRPIKNYTF  840
PAIPQLRRKI LPWTKAEEEK LKEGVQRLSS PHDRSIPWKQ ILEFGGDVFQ RGRTTIDLKD  900
KWRNICKGGP R