PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027085856.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 804aa MW: 88258.1 Da PI: 5.2078

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027085856.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.2	4.4e-09	745	797	3	46
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 +WT+ E+e+l+++v++l ++ Wk I + g gRt ++k++w++ XP_027085856.1 745 PWTKAEEEKLKEGVQRLSSPhdrsiPWKQILEFGGdvfqRGRTTIDLKDKWRN 797 8***************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence
MSAMDLTAVA PEMLNGDVQP FIVHKRASLP KPALQKLKDA ILEGSHSILS SLKERSGLTV 60 TTQCNDDIPV NGGNSNVLAQ RLEDCSINNR VTLPYGNAGS PTLDNMDDES PENLPDTNLL 120 PAKRKTAAMR SEIVEIQTDG DQTTLDDCCT SHVQATKKFK QKANFTEDTV VQNAIAPTTH 180 GPSTTLSEGV VRYIEKEGCN SKKEVQCGSS TPQNVDDDLE GNFPESNSIP AKRNRTAIAA 240 ENSEGKTLKD QIPLGDGCDI RGEVVKKFKQ DGNSMMDDID EDTVASPVHG LMKFSSEGTV 300 KHIEKEGCNL ETEVQVGGVE SNGSPHGDDD QHCQLKRIAQ SSHAFHQDHL VCDLQVPHDN 360 AKVAELHAEL DGQNNSVDET NGHDQGFELQ TENATSLAMG VMEKNNSPEN PVQNFEGNFQ 420 LSFGGSGSKD DMQHNPDFDM TSDSDDYRDE RMDIALKKDA LLSSQCTYSQ DSFATQAKYC 480 VKCNKEGQLL VCSSDTCQLA VHSSCLPSAA HFDGNGKFYC PFCAYSRAIS EYMQVKRKAS 540 FARKDLASFI GVQTVCQQKK ATMKLGRESR NELQKNEGNN SEDFVNKVSD SHCGVKMGNK 600 HQSEPPLSCS SDHSHSGEKV VSPSDGMPNT LVSGNLERKY MEPQCQLLGV QVEQPVVAHP 660 VHGSDVDCKE AHMADRNEGN AGAEGKKVSE IPESALPQEP VCGPISESSE EDNEKSVRSY 720 SIRLRRPIKN YTFPAIPQLR RKILPWTKAE EEKLKEGVQR LSSPHDRSIP WKQILEFGGD 780 VFQRGRTTID LKDKWRNICK GGPR

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence

MSAMDLTAVA PEMLNGDVQP FIVHKRASLP KPALQKLKDA ILEGSHSILS SLKERSGLTV  60
TTQCNDDIPV NGGNSNVLAQ RLEDCSINNR VTLPYGNAGS PTLDNMDDES PENLPDTNLL  120
PAKRKTAAMR SEIVEIQTDG DQTTLDDCCT SHVQATKKFK QKANFTEDTV VQNAIAPTTH  180
GPSTTLSEGV VRYIEKEGCN SKKEVQCGSS TPQNVDDDLE GNFPESNSIP AKRNRTAIAA  240
ENSEGKTLKD QIPLGDGCDI RGEVVKKFKQ DGNSMMDDID EDTVASPVHG LMKFSSEGTV  300
KHIEKEGCNL ETEVQVGGVE SNGSPHGDDD QHCQLKRIAQ SSHAFHQDHL VCDLQVPHDN  360
AKVAELHAEL DGQNNSVDET NGHDQGFELQ TENATSLAMG VMEKNNSPEN PVQNFEGNFQ  420
LSFGGSGSKD DMQHNPDFDM TSDSDDYRDE RMDIALKKDA LLSSQCTYSQ DSFATQAKYC  480
VKCNKEGQLL VCSSDTCQLA VHSSCLPSAA HFDGNGKFYC PFCAYSRAIS EYMQVKRKAS  540
FARKDLASFI GVQTVCQQKK ATMKLGRESR NELQKNEGNN SEDFVNKVSD SHCGVKMGNK  600
HQSEPPLSCS SDHSHSGEKV VSPSDGMPNT LVSGNLERKY MEPQCQLLGV QVEQPVVAHP  660
VHGSDVDCKE AHMADRNEGN AGAEGKKVSE IPESALPQEP VCGPISESSE EDNEKSVRSY  720
SIRLRRPIKN YTFPAIPQLR RKILPWTKAE EEKLKEGVQR LSSPHDRSIP WKQILEFGGD  780
VFQRGRTTID LKDKWRNICK GGPR