PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027086110.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27641 Da    PI: 10.0688
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027086110.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.6e-293585151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien   rqvtfskRr g+lKKA+ELSvLCdaeva+iifs++gklye+ss
  XP_027086110.1 35 KRIENAASRQVTFSKRRRGLLKKAFELSVLCDAEVALIIFSPSGKLYEFSS 85
                    79***********************************************96 PP
2K-box71.42.7e-24108197998
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      + +++++ ++e+a L+k++e L++++R+llG++L++ s+ eLqq+e qLe+sl+ iRs+K+ l+ eqi++l++ ek l++en +Lr+k+
  XP_027086110.1 108 MALQHSQNFEEEVAILRKKLEILEETKRKLLGDGLDTSSFDELQQIEGQLERSLNIIRSRKSLLFWEQIDHLKEEEKILRKENAELREKV 197
                     566899**********************************************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MLCICSNKWV VGGFNFGPRL LSKIVRMVRG KTQIKRIENA ASRQVTFSKR RRGLLKKAFE  60
LSVLCDAEVA LIIFSPSGKL YEFSSSSATS TIERYQKNIR NLCPSEKMAL QHSQNFEEEV  120
AILRKKLEIL EETKRKLLGD GLDTSSFDEL QQIEGQLERS LNIIRSRKSL LFWEQIDHLK  180
EEEKILRKEN AELREKVHLQ YEQQRLGQSI SRQPLSLRQV KEIETRLFIG LPESSNYP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.15e-68MIKC_MADS family protein