PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027086393.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YC
Protein Properties Length: 175aa    MW: 19961.5 Da    PI: 8.4539
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027086393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC35.81.8e-11811621899
           NF-YC  18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlr.swlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                     + ++P+ ri+ki+k  +   +++ ea  l  ka e f lel  r ++  a   +++ +    +a++v++ + fdfl di+p+ 
  XP_027086393.1  81 QCKFPMNRIQKIMKDHDASARLAQEAIFLANKASEKF-LELYCReAYACAFLDHKKQVSYDHLASVVSKRKRFDFLSDIIPQR 162
                     779*********************************9.5777773788888999999***********************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MGENWEKWVD ENKKSGGAGS SSTPKEVEKK KSKGKKKAVA EEEEREQESS GKKEMKNSKK  60
KKNMVAVEEG DDENEREEGP QCKFPMNRIQ KIMKDHDASA RLAQEAIFLA NKASEKFLEL  120
YCREAYACAF LDHKKQVSYD HLASVVSKRK RFDFLSDIIP QRVKAEDALA EVSDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-27NF-YC family protein