PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027086465.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 246aa    MW: 28319.6 Da    PI: 4.3982
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027086465.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.62.5e-11957149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ie+k ++qvtf+kRr+ +lK A EL    daevav i s+  +++ +
  XP_027086465.1  9 KKIEDKKKQQVTFTKRRKRLLKMAMELGQKYDAEVAVTIRSNASNIFAF 57
                    68*************************************9998777655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MGKRRIEIKK IEDKKKQQVT FTKRRKRLLK MAMELGQKYD AEVAVTIRSN ASNIFAFGHP  60
SNLPEDDLDE TEESPDDDDD DQEMSDCVME VNKAKLSSEN RNGDQDEVHD VAEKDDISDI  120
EEFLDDDDDD VDQEMSDHEM EKTVLMMMTV KMMIRRIRWG SQKNATDQQV QDTGNVVKKQ  180
ENSTANSIMM PNLIRDVPPV DDLELHELQE SMAQLEKMKK KVTDPVNQIR KSSADSSCDF  240
NKNART
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-07M-type_MADS family protein