PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027086562.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 160aa    MW: 18644.6 Da    PI: 9.6394
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027086562.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.11e-2126113189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                     kfYn+Y  ++ Fsvrk++ +k  ++g it+r++ C k+g +++ + +    +rtra t+tgC ak+ + + + + k++v++l+leHnH+l
  XP_027086562.1  26 KFYNKYVFKMSFSVRKDYLNKD-KDGVITSRRYSCCKKGVKHKYEGD-AMPKRTRAPTKTGCGAKMIIVLLRgTMKYRVHDLVLEHNHKL 113
                     6*****************9998.8999**************999998.89999*************9999888***************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    
MDCSKLTEDK IPELGMEFNS EEYAYKFYNK YVFKMSFSVR KDYLNKDKDG VITSRRYSCC  60
KKGVKHKYEG DAMPKRTRAP TKTGCGAKMI IVLLRGTMKY RVHDLVLEHN HKLHIVQCSH  120
MMASQRKVSE VQRFQPEISK DDGFSLKQSH ELMGKETDFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.24e-14FAR1 family protein