PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027086640.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 321aa    MW: 35318.3 Da    PI: 4.1361
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027086640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.42.8e-112261140
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    k+ie k n  v+fskRr+g++KKAeE     +a+va+++ 
  XP_027086640.1 22 KKIEKKKNLLVSFSKRRAGLFKKAEEYGKKSGAQVAILVC 61
                    689*************************999999999874 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MEENAVILNK RNFGGRRKIQ IKKIEKKKNL LVSFSKRRAG LFKKAEEYGK KSGAQVAILV  60
CWGGRFFTFG GPDSASVDSI LDQYLAGMMP SSSSSSSSKN GTVVDDQGKS KPVEIEENTM  120
EEEVIERGLM ETNQVSDGKE SLLKQPLDND DLQWVDELKN YMVTMKGLEG EELSQEDDGT  180
IRAANDNINS DPDSSMNDDQ RIGGADIAVN DVNPVYISGL PMNNDLFQEC NEMTRAAADA  240
ASSRLLIPKV NLDYFSVILN VNLDYFGGLP MNNDFLQDDE MNRVADTVNG DVDSSSSLIP  300
SVNLDCFGGL PIDFDFESSV Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-11M-type_MADS family protein