PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027086718.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 615aa MW: 71205.7 Da PI: 8.1233

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027086718.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.2	2.8e-23	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn+YA ++GFsvrk++ +k ++g i++r++ C keg +++ + + + +rtra t++gC ak+++ + + + k++v++l+leHnHel XP_027086718.1 26 QFYNKYAFKMGFSVRKDYLNKD-KDGMIMSRRYSCCKEGVKRKYEGD-VMPKRTRAPTKIGCGAKMVIVLFRgTMKYHVHDLVLEHNHEL 113 6****************998.8888************9999.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence
MDCSKLAEDG TPELGMEFNS EEDAYQFYNK YAFKMGFSVR KDYLNKDKDG MIMSRRYSCC 60 KEGVKRKYEG DVMPKRTRAP TKIGCGAKMV IVLFRGTMKY HVHDLVLEHN HELHIAQCAH 120 MMPSQRKVSE TQGFQAEISE DAGLSLKQSH ELMGKEAGGM GNVGYTREDL KRYLRTRRER 180 SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL DCEEQITNIF WVDAGMLIDY KFFGDVVTFD 240 TTYKTNKEYR PLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MCGKRPSTIL 300 TDQDHVMAAA LSVVMPETFH GLCTFHIRRN FMKHFGNHYK ENSDLPYMFG ACMYEFEEVE 360 QFNRVWEAMV KKHNLENNEW LSGLYRIHDK WARHFNRVVD EKKHNELIAE YEMRQKLPMV 420 GLRQTPMLVH ASETYSPTVF VAFQNEYGES TAMVILRQQD AAMIVEFAVM RYNGGPERIV 480 VFNRNDLSVR CSCKKYENEG ILCGHALKVF DTVGIKIIPP EYIKRRWTKR ARAGDCFDRR 540 RREVVADPKI MISTRYRELA PSMIKVATRA AMSEDTSKVA ITIISDLAKR VELLLSESEE 600 QPLQNQKKSK YGGTG

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence

MDCSKLAEDG TPELGMEFNS EEDAYQFYNK YAFKMGFSVR KDYLNKDKDG MIMSRRYSCC  60
KEGVKRKYEG DVMPKRTRAP TKIGCGAKMV IVLFRGTMKY HVHDLVLEHN HELHIAQCAH  120
MMPSQRKVSE TQGFQAEISE DAGLSLKQSH ELMGKEAGGM GNVGYTREDL KRYLRTRRER  180
SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL DCEEQITNIF WVDAGMLIDY KFFGDVVTFD  240
TTYKTNKEYR PLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MCGKRPSTIL  300
TDQDHVMAAA LSVVMPETFH GLCTFHIRRN FMKHFGNHYK ENSDLPYMFG ACMYEFEEVE  360
QFNRVWEAMV KKHNLENNEW LSGLYRIHDK WARHFNRVVD EKKHNELIAE YEMRQKLPMV  420
GLRQTPMLVH ASETYSPTVF VAFQNEYGES TAMVILRQQD AAMIVEFAVM RYNGGPERIV  480
VFNRNDLSVR CSCKKYENEG ILCGHALKVF DTVGIKIIPP EYIKRRWTKR ARAGDCFDRR  540
RREVVADPKI MISTRYRELA PSMIKVATRA AMSEDTSKVA ITIISDLAKR VELLLSESEE  600
QPLQNQKKSK YGGTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	524	542	KRRWTKRARAGDCFDRRRR
2	538	543	DRRRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-98	FAR1 family protein