PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027086719.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 685aa MW: 78843.4 Da PI: 8.2437

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027086719.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.3	2.6e-23	21	108	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +fYn+Y+ vGFsvrk++ +k ++g +t+r+++C keg++ + + + +k +rtraet+tgC+ak+ + +++ + k++v +l+ eHnH l XP_027086719.1 21 NFYNRYGLVVGFSVRKDYLNKD-KDGVVTSRRYTCCKEGFKPRYEGD-VKPKRTRAETKTGCEAKMGIILNReTMKYQVRDLVIEHNHIL 108 6***************9998.8999**********999988.9***************999989************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence
MEEALCPKIG MEFQSEDEAY NFYNRYGLVV GFSVRKDYLN KDKDGVVTSR RYTCCKEGFK 60 PRYEGDVKPK RTRAETKTGC EAKMGIILNR ETMKYQVRDL VIEHNHILHI SECAHMMRSQ 120 RKVSISQGAQ AEIANDAGIS LKQSHELMGK EAGGLGNIGY TRDDLKRYLR TKRERGLKYG 180 EAGAMLQYFE EQKLENPSFF HAEQLDCEEQ ITNIFWADAS MLMDYTYFGD VITFDTTYKT 240 NKEYRPLGVF VGFNQFRQLV IFGATLLYDE TIESFKWVFG TFVEAVCGRH PKTIFTDQDA 300 AMAAAISAVM PSTYHGLCTF HIRVNFMKHL GNYYKDGSNL PYRFGECMYE IEDENEFIMA 360 WDAMLKEHKL ETNEWLCGIY ACRKKWAKCF MKGAWTAGMR STQLSESLNA SIKNYLKLDH 420 DLVEFFKHFD RVVDEKRYNE LRAEYHSRQK LPMLGLQQTP VLIQAACIYS PCMFVAFQNE 480 YDECTTMVIL DQKHTTMHVE YSVSHYDGGR ARRLILNPIT KDITCSCNLF EQEGILCSHA 540 LKVYDMVGTK FIPDQYVTKR WTKKARSGGS VDCKGREISS DPSLSISHRY RLLAPEMVRL 600 ATRAAMSEAA TKLVSSAMSE LSKRVEMLFC GEIDEITQNS ASMDLCKGIQ VQNAAGHFVT 660 PTGLKKRRGR KTKKVLRSWV DRFHR

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence

MEEALCPKIG MEFQSEDEAY NFYNRYGLVV GFSVRKDYLN KDKDGVVTSR RYTCCKEGFK  60
PRYEGDVKPK RTRAETKTGC EAKMGIILNR ETMKYQVRDL VIEHNHILHI SECAHMMRSQ  120
RKVSISQGAQ AEIANDAGIS LKQSHELMGK EAGGLGNIGY TRDDLKRYLR TKRERGLKYG  180
EAGAMLQYFE EQKLENPSFF HAEQLDCEEQ ITNIFWADAS MLMDYTYFGD VITFDTTYKT  240
NKEYRPLGVF VGFNQFRQLV IFGATLLYDE TIESFKWVFG TFVEAVCGRH PKTIFTDQDA  300
AMAAAISAVM PSTYHGLCTF HIRVNFMKHL GNYYKDGSNL PYRFGECMYE IEDENEFIMA  360
WDAMLKEHKL ETNEWLCGIY ACRKKWAKCF MKGAWTAGMR STQLSESLNA SIKNYLKLDH  420
DLVEFFKHFD RVVDEKRYNE LRAEYHSRQK LPMLGLQQTP VLIQAACIYS PCMFVAFQNE  480
YDECTTMVIL DQKHTTMHVE YSVSHYDGGR ARRLILNPIT KDITCSCNLF EQEGILCSHA  540
LKVYDMVGTK FIPDQYVTKR WTKKARSGGS VDCKGREISS DPSLSISHRY RLLAPEMVRL  600
ATRAAMSEAA TKLVSSAMSE LSKRVEMLFC GEIDEITQNS ASMDLCKGIQ VQNAAGHFVT  660
PTGLKKRRGR KTKKVLRSWV DRFHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-102	FAR1 family protein