PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027086738.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 422aa MW: 48352.7 Da PI: 6.7252

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027086738.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.5	3.8e-17	86	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn Y k GF +rks+ k+ ++g r++vC +eg+r+e+ + ++++r+ +a trtg a+++vk ++ + k++vt++ eHnH+la XP_027086738.1 86 EFYNLYVKLSGFGIRKSNAKRD-EDGISRFRKWVCCCEGYRNEKWFNyEDRKREAKAITRTGYGACFRVKYDTeSVKYVVTRFIIEHNHPLA 176 6**************98887.8898999********9988767889999*************9899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MGQDGVLKTH YMVQETEKGK MGMDGCGRLM SFDLNQEPEC DRDTCSEESG GSMGGHEDEE 60 ADELVGAIGV DDVMKLTFDT EEEAGEFYNL YVKLSGFGIR KSNAKRDEDG ISRFRKWVCC 120 CEGYRNEKWF NYEDRKREAK AITRTGYGAC FRVKYDTESV KYVVTRFIIE HNHPLASEAS 180 VQHLRSHRKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER 240 RKDIFNGDAE GALGFLAAKK DADDMFFYKY GVDNEGRLAR LFWADSKSRV DFSVFGDVLV 300 FDTTYKTNKY RKPLVVLAGV NNHLNSTIFG CALLSDERIE TYEWVLSTFV EAMKGRKPVA 360 VMTDGDSAMR RAIKNLLPDA CHRLCSWHLH RNARSNIRCE EFNNRLYDLM ARKFSTLEFE 420 DR

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MGQDGVLKTH YMVQETEKGK MGMDGCGRLM SFDLNQEPEC DRDTCSEESG GSMGGHEDEE  60
ADELVGAIGV DDVMKLTFDT EEEAGEFYNL YVKLSGFGIR KSNAKRDEDG ISRFRKWVCC  120
CEGYRNEKWF NYEDRKREAK AITRTGYGAC FRVKYDTESV KYVVTRFIIE HNHPLASEAS  180
VQHLRSHRKV SDAEYAQAKS LKLVGARICQ IMKHFVIKAG GYSNVGFCIK DLYNRMDEER  240
RKDIFNGDAE GALGFLAAKK DADDMFFYKY GVDNEGRLAR LFWADSKSRV DFSVFGDVLV  300
FDTTYKTNKY RKPLVVLAGV NNHLNSTIFG CALLSDERIE TYEWVLSTFV EAMKGRKPVA  360
VMTDGDSAMR RAIKNLLPDA CHRLCSWHLH RNARSNIRCE EFNNRLYDLM ARKFSTLEFE  420
DR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-60	FAR1 family protein