PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027087159.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 320aa    MW: 37092.8 Da    PI: 8.4193
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027087159.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF551.1e-171050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     i nk  r v f kRr+g+ KKA ELS+LC++++++i+f++
  XP_027087159.1 10 MITNKKARRVAFEKRRKGLEKKARELSTLCGVRICLIVFGP 50
                    699************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MGRAKARMEM ITNKKARRVA FEKRRKGLEK KARELSTLCG VRICLIVFGP VDDDQTIEPR  60
VWPQNPQEID SLVDSFKKAN LDDCRGRTTD FSFFYQNRKR SAEEELARLR KKNLETKHPT  120
WDEKYDFLSL EELGQFDDLL KEKVDIMKAR VDFMKGTQTY FAGTSGNLQY LYRSRDSSTR  180
FEIPQPQPLS SFDQNRHSLD SAFQDSYNYN SMANPQMMMW MNNGASSSIN APLISYDNCD  240
HRSLVQFNMD PTAAATAERI TSSLGNNAVG NQFCYYVPKM QPMPLYLQYS LQQSRAPTQM  300
YASQRDENYG FSDFELMNPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-23M-type_MADS family protein