PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027087507.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 753aa MW: 83350.3 Da PI: 4.3869

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027087507.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.3	2.7e-11	600	641	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el+++av+q+G++ + I + ++ gRt+ q+k+++ k XP_027087507.1 600 RWSKQDTELFYEAVRQFGTD-LSMIQQLFP-GRTRRQIKLKYKK 641 8*****************.*****.*********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence
MDADLFDDIL TDNAVKTARA GGKFQPKAKP CGPPRPIKKN SGPSSLPSSE PVRTNDVSES 60 TADECHEKEK PAASVDDRSF GVVNCTSQHL DSSGNGNPIA SLGPVMDIFV PDSNEDWHSC 120 FEKTMGENSD IFIGLESLGD FLPDSATVLD NSIPSSEARN VHISDSENTE GGLADPLIPN 180 ISSQSEFSTA QDPLAGTDRI VVTSGGCSDD RNLDTEEMET YQVDSLDMSE LTTSSGRRKF 240 QPKSKMQAHR QGSGSSIPDL DMVDPVLCQQ DLESVPSEVD VVDCRSVPAS PTDDILDVSS 300 AGPNQTAPAQ LTSEVLLDAE PSNLMGASYQ EDGILVDHSE AVLELPGKLA SRRAKSGKGK 360 THIALDHSPK KQLASKSSET NVGGRSLRRR TKRKNAHNLV DESEDEDLED RDLPAESLSN 420 SVLNEDDNTD EEFQLEDDSQ TKKSQKKCKK PTFDKEKPAR KRKKDTEASE QAVKAAPKKF 480 SHSTRRRRVD KALLETPEDE IDFQKVPLRD LILLAEYRER MAKKEATTTP GPLSNQSNGN 540 CSARDNEDGA AGTSEQYGED EAFASEQGRE ANDEQESPQV EENSGYFNYQ TYMDKTPIAR 600 WSKQDTELFY EAVRQFGTDL SMIQQLFPGR TRRQIKLKYK KEERQHPLML REALSTRSKD 660 HSHFELVIER LKQMAAEEKQ NSSTADSVNL MGEEEAEEET LETNEMDEEA KSEQIDGGVL 720 GNMEPDISET QSPEKSYDSE EELLRWSQYK SEI

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence

MDADLFDDIL TDNAVKTARA GGKFQPKAKP CGPPRPIKKN SGPSSLPSSE PVRTNDVSES  60
TADECHEKEK PAASVDDRSF GVVNCTSQHL DSSGNGNPIA SLGPVMDIFV PDSNEDWHSC  120
FEKTMGENSD IFIGLESLGD FLPDSATVLD NSIPSSEARN VHISDSENTE GGLADPLIPN  180
ISSQSEFSTA QDPLAGTDRI VVTSGGCSDD RNLDTEEMET YQVDSLDMSE LTTSSGRRKF  240
QPKSKMQAHR QGSGSSIPDL DMVDPVLCQQ DLESVPSEVD VVDCRSVPAS PTDDILDVSS  300
AGPNQTAPAQ LTSEVLLDAE PSNLMGASYQ EDGILVDHSE AVLELPGKLA SRRAKSGKGK  360
THIALDHSPK KQLASKSSET NVGGRSLRRR TKRKNAHNLV DESEDEDLED RDLPAESLSN  420
SVLNEDDNTD EEFQLEDDSQ TKKSQKKCKK PTFDKEKPAR KRKKDTEASE QAVKAAPKKF  480
SHSTRRRRVD KALLETPEDE IDFQKVPLRD LILLAEYRER MAKKEATTTP GPLSNQSNGN  540
CSARDNEDGA AGTSEQYGED EAFASEQGRE ANDEQESPQV EENSGYFNYQ TYMDKTPIAR  600
WSKQDTELFY EAVRQFGTDL SMIQQLFPGR TRRQIKLKYK KEERQHPLML REALSTRSKD  660
HSHFELVIER LKQMAAEEKQ NSSTADSVNL MGEEEAEEET LETNEMDEEA KSEQIDGGVL  720
GNMEPDISET QSPEKSYDSE EELLRWSQYK SEI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	388	394	RRRTKRK
2	460	464	RKRKK
3	460	465	RKRKKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	4e-50	MYB_related family protein