PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027087585.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 681aa MW: 79047.3 Da PI: 6.9213

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027087585.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.3	2.2e-22	70	161	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s++ g ++kr+fvC++ g++ +kk t +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel XP_027087585.1 70 DYYGNFARKNGFSIRKERSRLSQQLG-VYKRDFVCYRAGFAPARKKPTGEHQRDRKSARCGCDAKMYLSKEVvngVSQWFVVQFSNVHNHELL 161 59******************8888.***************************************99867789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence
MVSIPSKNIW MRRQQCPCGD WKCFLAYEGE AEDTIISPES AVKNVDFGSS EAMVAPYVGM 60 VFKNDNDAFD YYGNFARKNG FSIRKERSRL SQQLGVYKRD FVCYRAGFAP ARKKPTGEHQ 120 RDRKSARCGC DAKMYLSKEV VNGVSQWFVV QFSNVHNHEL LEDDQVRLLP AYRKIHEADQ 180 ERILLLSKAG FPIHRIVKVL ELEKGIQGGQ LPFLERDVRN FVQNRKKLVQ ETDALLNEKR 240 ENDTMDLLEA CRVTKESDAY FVYDVTVDEN DRVENIAWSY GDSIHAYNMF GDVVYFDTTY 300 RSMTYGMLFG AWLGINNHGK IIFFGCALLQ DETPRSFAWA LQAFCRFVKG RYPQTIITDI 360 DLGLRDAIRS ELPNTRHIIS IWNILPKVFS WFSLLLGPRY SELKSELEVL YHVENTEEFE 420 YQWSQMVSRF GLNSDRHISL IFSLRLFWAL SYIRGCFLAQ MASISYSKSV DTFLKGIFSA 480 QTCLRSFFEQ VGILSNYKAQ AAHEDLQYMQ LRTCLPLEQH ARNILTPFAF NALQQELILS 540 MQYAASEMAN GSYLVRHFKK MDGEYLVIWI PEDEQIHCSC KEFESSGILC RHALRVLVVK 600 NYFELPDKYC LSRWRLGNSL VSYGEHGNQI GIDKWFQEFN CLTETLFSEA SLAKERSDYV 660 RKEITKELTR LINEVRDMPC N

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence

MVSIPSKNIW MRRQQCPCGD WKCFLAYEGE AEDTIISPES AVKNVDFGSS EAMVAPYVGM  60
VFKNDNDAFD YYGNFARKNG FSIRKERSRL SQQLGVYKRD FVCYRAGFAP ARKKPTGEHQ  120
RDRKSARCGC DAKMYLSKEV VNGVSQWFVV QFSNVHNHEL LEDDQVRLLP AYRKIHEADQ  180
ERILLLSKAG FPIHRIVKVL ELEKGIQGGQ LPFLERDVRN FVQNRKKLVQ ETDALLNEKR  240
ENDTMDLLEA CRVTKESDAY FVYDVTVDEN DRVENIAWSY GDSIHAYNMF GDVVYFDTTY  300
RSMTYGMLFG AWLGINNHGK IIFFGCALLQ DETPRSFAWA LQAFCRFVKG RYPQTIITDI  360
DLGLRDAIRS ELPNTRHIIS IWNILPKVFS WFSLLLGPRY SELKSELEVL YHVENTEEFE  420
YQWSQMVSRF GLNSDRHISL IFSLRLFWAL SYIRGCFLAQ MASISYSKSV DTFLKGIFSA  480
QTCLRSFFEQ VGILSNYKAQ AAHEDLQYMQ LRTCLPLEQH ARNILTPFAF NALQQELILS  540
MQYAASEMAN GSYLVRHFKK MDGEYLVIWI PEDEQIHCSC KEFESSGILC RHALRVLVVK  600
NYFELPDKYC LSRWRLGNSL VSYGEHGNQI GIDKWFQEFN CLTETLFSEA SLAKERSDYV  660
RKEITKELTR LINEVRDMPC N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1 family protein