PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027087601.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LBD
Protein Properties Length: 191aa    MW: 21554.6 Da    PI: 5.6013
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027087601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.58e-42241231100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk lrr+C+++Cvlapyfp+++p +f +vhk++Gasn+++ l++lpe++r+dam+s+vyeA ar+rdPvyG++g+++ lqqq+  l++ela
  XP_027087601.1  24 PCAACKSLRRRCPDNCVLAPYFPSSEPLRFTIVHKVYGASNIVRRLQELPEHQRSDAMNSMVYEAAARIRDPVYGCAGTVTLLQQQILGLQEELA 118
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_027087601.1 119 KAQAE 123
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    
MEHCRQQSTP PCPDQNATPP IQYPCAACKS LRRRCPDNCV LAPYFPSSEP LRFTIVHKVY  60
GASNIVRRLQ ELPEHQRSDA MNSMVYEAAA RIRDPVYGCA GTVTLLQQQI LGLQEELAKA  120
QAEILNMQCQ IANLVSLNWM EMFPSQEQEP INVSGLQQDI IHISEKQPCD ARDTTNFSLE  180
QLCTHEKPMG I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-51LBD family protein