PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027087606.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 129aa MW: 14634.6 Da PI: 4.1519

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027087606.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	54.2	4.2e-17	8	61	47	100
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +lpe++r+dam+s+vyeA ar+ dPvyG++g+++ lqqq+ l++ela+++ e XP_027087606.1 8 LELPEHQRSDAMNSMVYEAAARITDPVYGCAGTVTLLQQQILGLQEELAKAQGE 61 5789*********************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence
MVIPRKYLEL PEHQRSDAMN SMVYEAAARI TDPVYGCAGT VTLLQQQILG LQEELAKAQG 60 EILNMQCQIA NLVSLNWMEM FPSQEQETIN VSGLQQDIIH MSEKQPWDDS DTTNFSLEQF 120 CTHEKAMGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-21	LBD family protein