PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027087620.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family LBD
Protein Properties Length: 152aa    MW: 16930.2 Da    PI: 8.3174
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027087620.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.91.4e-3751041100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+C+++C+l+p+fp ++p++fa+vhk++Gasnv k+l+++p ++r +a+++++yeA +r++dPvyG+vg+i  lqq++  ++ +la
  XP_027087620.1   5 RCAGCKYLRRRCPSNCILSPHFPPNDPQRFACVHKIYGASNVAKMLQQVPVQQRAEAANAMYYEAYCRIKDPVYGCVGTIALLQQRIFDAECQLA 99 
                     6********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_027087620.1 100 KIQAE 104
                     99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    
MNSKRCAGCK YLRRRCPSNC ILSPHFPPND PQRFACVHKI YGASNVAKML QQVPVQQRAE  60
AANAMYYEAY CRIKDPVYGC VGTIALLQQR IFDAECQLAK IQAEIAVLNG HREATHQNQQ  120
VNVATSSANF TLESGGEGTF SSTYDPSICQ FY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.13e-48LBD family protein