PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027087702.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 374aa    MW: 41009.1 Da    PI: 3.8708
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027087702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.98.5e-162271150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+ie k n  v+fskRr+g++KKAeE S   +a+va+++ s+ g++++++
  XP_027087702.1 22 KKIEKKKNLLVSFSKRRAGLFKKAEEYSKKSGAQVAILVQSPGGRFFTFC 71
                    689**********************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    
MEENAVILNK RNFGGRRKIE IKKIEKKKNL LVSFSKRRAG LFKKAEEYSK KSGAQVAILV  60
QSPGGRFFTF CGPDSALVDS ILNQYLAGMM PSSSSSSSAK NGTVVDDQGK SNPVEIEENT  120
MEEEVIEQGL METNQVSDGK ESLLKQLLDN DDLQCFDELE NYMVTMKGLE SEELSQEDDG  180
TNRAADDTIN GDPDSSSLLN PNVNLDYFGG FPVNNDQMIG GADTAVNDAN PVYFSGLPVT  240
NDFFQEYNEM TRAAADAASS SLLIPKVNLD YFSGLPKNND FFQDDEMARP ADTINGDADP  300
SSLAIPNVNL DYFGGLPMNN DFFQDDEMNR AADAVNGDVD SSSLLIPSVN LDCLGGLPLD  360
FDFDEPSPQY NDWE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-12M-type_MADS family protein