PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027087711.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 356aa MW: 39610.3 Da PI: 6.6014

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027087711.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	7.7e-18	38	85	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv+ ++ +G g+W+++++ g+ R++k+c++rw +yl XP_027087711.1 38 RGLWSPEEDEKLVKHITAHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 85 788*******************************************97 PP
2	Myb_DNA-binding	52.7	9.8e-17	91	134	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ ++d+++ lG++ W+ Ia++++ gRt++++k++w++ XP_027087711.1 91 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 134 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MMMTCTNECG GEGGRVGLVV ILEEDMGHHC CSKQKVKRGL WSPEEDEKLV KHITAHGHGC 60 WSSVPKLAGL QRCGKSCRLR WINYLRPDLK RGSFTEQEER TIIDVHRILG NRWAQIAKHL 120 PGRTDNEVKN FWNSVIKKKL IAQGLDPNTH NLLSPHQTKA KNNGNTISKL NSHHQESGSV 180 FTMDTSPGNK EIIDAKSTLS LPSSYINSSA LNGASSITTF EFQNPSNLAW TDHGTHSSHQ 240 QSMMEFSSCS SMESTPISTS SLPSSGFGIL AENCMWGNGF EPCFDHTPPQ QQQQPEKVST 300 DQEKVYRVSN HEFNGCQNAE NGFDSSNIDF EFMDSALVPP GMYCNVNSMD QLAWDC

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MMMTCTNECG GEGGRVGLVV ILEEDMGHHC CSKQKVKRGL WSPEEDEKLV KHITAHGHGC  60
WSSVPKLAGL QRCGKSCRLR WINYLRPDLK RGSFTEQEER TIIDVHRILG NRWAQIAKHL  120
PGRTDNEVKN FWNSVIKKKL IAQGLDPNTH NLLSPHQTKA KNNGNTISKL NSHHQESGSV  180
FTMDTSPGNK EIIDAKSTLS LPSSYINSSA LNGASSITTF EFQNPSNLAW TDHGTHSSHQ  240
QSMMEFSSCS SMESTPISTS SLPSSGFGIL AENCMWGNGF EPCFDHTPPQ QQQQPEKVST  300
DQEKVYRVSN HEFNGCQNAE NGFDSSNIDF EFMDSALVPP GMYCNVNSMD QLAWDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	2e-81	MYB family protein