PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027088207.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-X1

Protein Properties

Length: 387aa MW: 42913.8 Da PI: 8.4447

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027088207.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	17.1	1.2e-05	184	202	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H C lCH+GpCp+Cp+ XP_027088207.1 184 CG-HECLLLCHPGPCPSCPK 202 .*************96 PP
2	zf-NF-X1	21.3	6e-07	236	254	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG H+C+++CH G+Cp C+ XP_027088207.1 236 CGSHRCGEICHDGDCPMCR 254 ******************8 PP
3	zf-NF-X1	17.6	8.4e-06	289	308	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C++ CH+G+C++Cp+ XP_027088207.1 289 CGRHVCERGCHKGNCGECPL 308 ******************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MATSNTTLLP PLSPPSSDSH SDSGTSSRQH QHTDLSSTIF KSYLELTGHQ SSPQHQDLIK 60 IQSFLTSSRS GALSCLICLE RIKPTDPTWS CSSRCFAVFH LLCIQSWAHQ SSNLAAARAA 120 SRAATLNDDT LRWHCPKCRI EYPKSQTPKY YYCFCGKLEN PPHDPWILPH SCGEICGRPL 180 TYNCGHECLL LCHPGPCPSC PKLVKTKCYC GAKEDVRRCG FKDFSCKGVC RKTLACGSHR 240 CGEICHDGDC PMCRKKGVYK CQCGKVELER ECCERIFRCE NPCQKLLGCG RHVCERGCHK 300 GNCGECPLQG KRTCPCGKRV YEGMACDVVV PLCGATCDKL LSCGFHRCPE RCHRGPCIET 360 CRTVVTKSSR CGSARKQVIL KVIGKMR

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MATSNTTLLP PLSPPSSDSH SDSGTSSRQH QHTDLSSTIF KSYLELTGHQ SSPQHQDLIK  60
IQSFLTSSRS GALSCLICLE RIKPTDPTWS CSSRCFAVFH LLCIQSWAHQ SSNLAAARAA  120
SRAATLNDDT LRWHCPKCRI EYPKSQTPKY YYCFCGKLEN PPHDPWILPH SCGEICGRPL  180
TYNCGHECLL LCHPGPCPSC PKLVKTKCYC GAKEDVRRCG FKDFSCKGVC RKTLACGSHR  240
CGEICHDGDC PMCRKKGVYK CQCGKVELER ECCERIFRCE NPCQKLLGCG RHVCERGCHK  300
GNCGECPLQG KRTCPCGKRV YEGMACDVVV PLCGATCDKL LSCGFHRCPE RCHRGPCIET  360
CRTVVTKSSR CGSARKQVIL KVIGKMR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	1e-147	NF-X1 family protein