PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027088313.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 306aa    MW: 35156.6 Da    PI: 7.4995
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027088313.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.7e-1720105798
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +  +  +g+l lpk+f++e+g +      ++l+ +sg  ++v +  +k  ++ +l++GW++F++ + L  g f+ Fk++g+sef   v +f+
  XP_027088313.1  20 TQPAVDEGQLGLPKNFVKEYGDE--ICSSVRLNVPSGGIFRVGI--EKDENMLWLRDGWQRFAEHHSLTFGHFLWFKYKGNSEF--DVAIFD 105
                     445556678***********865..4449***************..**********************************9999..888876 PP
2B357.52.5e-18205297397
                     EE-..-HHHHTT-E.E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   3 kvltpsdvlksgrl.vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     + ++++++l+++ +  +p +f +++       +k + l+d++g++W+v +i  ++++ + l+kGW  F+++++L++gD++vF++++++    +v+
  XP_027088313.1 205 SMTMKEYNLSRCYIvHVPAEFSSTYlR-T--DKKSVELQDSDGNKWTVGVI-VRHGRVISLSKGWGYFCRDHKLCSGDVCVFEVIKSRPVVIKVT 295
                     55678899999766479*****99953.3..3356***************5.5666679************************998766666666 PP

                     EE CS
              B3  96 vf 97 
                     +f
  XP_027088313.1 296 IF 297
                     66 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MKNNRDWQSL DASSFYRIIT QPAVDEGQLG LPKNFVKEYG DEICSSVRLN VPSGGIFRVG  60
IEKDENMLWL RDGWQRFAEH HSLTFGHFLW FKYKGNSEFD VAIFDLTATE IDYQCCSNNS  120
KKFNPVAETT VPEPEHDAFC SAKADDRHPI EISSSSETEE VEIRDVTTDS GNPRSIRRRS  180
RRRGKKISEH DVVTRLFKSD NPYFSMTMKE YNLSRCYIVH VPAEFSSTYL RTDKKSVELQ  240
DSDGNKWTVG VIVRHGRVIS LSKGWGYFCR DHKLCSGDVC VFEVIKSRPV VIKVTIFPAR  300
ESVEVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178186RRSRRRGKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-25B3 family protein