PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027088498.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 131aa    MW: 15392.4 Da    PI: 10.9143
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027088498.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.74.6e-11957149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ie+k ++   f  R+ g++KKA  L  L da va+i +s+ gk+ ey
  XP_027088498.1  9 KKIEDKKKQRDIFEARQRGLFKKARQLVQLYDAGVALITISEVGKISEY 57
                    689999999999************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    
MGKRKLEVKK IEDKKKQRDI FEARQRGLFK KARQLVQLYD AGVALITISE VGKISEYGNP  60
TLDSILQRYQ EAKKGEAAIK ASNDVQPQKL TMIFSHKQRI FPNMMLMKQR KALMMMIRTF  120
LIKKYEITVK W
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316KRKLEVKKIEDKKK
2417KRKLEVKKIEDKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65360.12e-09M-type_MADS family protein