PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027088552.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 495aa MW: 58286.1 Da PI: 9.1546

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027088552.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.9	1.6e-23	11	98	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++GF+vrk++ +k+ ++g +t+r++ C keg +++ + + + +rtra+t+tgC ak+++ + + k++v++l+leHnHel XP_027088552.1 11 KFYNKYAFKMGFNVRKDYLNKN-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRASTKTGCGAKMVIVLFRwAMKYRVHDLVLEHNHEL 98 6*****************99.8899************9999.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MEFNSEEDAY KFYNKYAFKM GFNVRKDYLN KNKDGVTTSR RYSCCKEGVK RKYEGDVMPK 60 RTRASTKTGC GAKMVIVLFR WAMKYRVHDL VLEHNHELHI AQCAHMMPSQ RKSHELMGKK 120 VGGMGNVGYT RDDLKRYFRT RRLDCEEQIM NIFWADAGML IDYNIFGDVV TFDTTYKTNK 180 EYRSFGVFVG FNQHRQIVIF GAALMYDETI DSFKWVFGTF LEAMCGKRPS TILTDQDHAM 240 TAVLSVVMPE TFHGLCTFHI RRNFMKHFGN HYKKNSDLPY MFGACMYEFE EVEQFNRVWE 300 AMVKKHNLEN NEWLSGLYRI RDKWARCMIK ERWTAGMRSP QLSESLNAAI KNHLKLDHDL 360 VQFFRHFNRV VDEKRYNELI AEYEMRQKLP MVGLRQTPML VHASETYSPT IFVTFQNEYG 420 ESTAMVILRQ QDATMFVEFA VMRYDGGPER IVVFNRNDLS VRYSCKKYEN EGILCGHALK 480 VFDTVGTIQI ARHKH

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MEFNSEEDAY KFYNKYAFKM GFNVRKDYLN KNKDGVTTSR RYSCCKEGVK RKYEGDVMPK  60
RTRASTKTGC GAKMVIVLFR WAMKYRVHDL VLEHNHELHI AQCAHMMPSQ RKSHELMGKK  120
VGGMGNVGYT RDDLKRYFRT RRLDCEEQIM NIFWADAGML IDYNIFGDVV TFDTTYKTNK  180
EYRSFGVFVG FNQHRQIVIF GAALMYDETI DSFKWVFGTF LEAMCGKRPS TILTDQDHAM  240
TAVLSVVMPE TFHGLCTFHI RRNFMKHFGN HYKKNSDLPY MFGACMYEFE EVEQFNRVWE  300
AMVKKHNLEN NEWLSGLYRI RDKWARCMIK ERWTAGMRSP QLSESLNAAI KNHLKLDHDL  360
VQFFRHFNRV VDEKRYNELI AEYEMRQKLP MVGLRQTPML VHASETYSPT IFVTFQNEYG  420
ESTAMVILRQ QDATMFVEFA VMRYDGGPER IVVFNRNDLS VRYSCKKYEN EGILCGHALK  480
VFDTVGTIQI ARHKH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-69	FAR1 family protein