PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027088622.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 209aa    MW: 24260.6 Da    PI: 9.367
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027088622.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.65.7e-2526113189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                     kfYn+YA ++GFsvrk++ +k  ++g +t+r++ C keg +++ +++ +  +rtra t+tgC ak+++ + + + k++v++l+leHnHel
  XP_027088622.1  26 KFYNKYAFKMGFSVRKDYLNKD-KDGVTTSRRYSCCKEGVKRKYESD-VMPKRTRAPTKTGCGAKMVIALFRgTMKYRVHDLVLEHNHEL 113
                     6*****************9998.8999****************9999.999*******************999****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MDCSKLAEDG TPELGMEFNS KRDAYKFYNK YAFKMGFSVR KDYLNKDKDG VTTSRRYSCC  60
KEGVKRKYES DVMPKRTRAP TKTGCGAKMV IALFRGTMKY RVHDLVLEHN HELHIAQCSH  120
MMPSQRKMSE AQGFQAEISV DAGFSLKQSY ELMGKEASGM ENVGYTREDL KRYLRTRWER  180
SLKYGETGSM LNYFQEQTLE NPSFFHAYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-24FAR1 family protein