PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027088713.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 282aa    MW: 32578.5 Da    PI: 8.6226
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027088713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1591.6e-181791089
            FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89
                    +GFsvrk++ +k  ++g +t++++ C keg +++ + + +  +rtra t+tgC ak+++ + + + k++v++l leHnHel
  XP_027088713.1  1 MGFSVRKDYLNKD-KDGMTTSKRYSCCKEGVKRKYEGD-VMPKRTRAPTKTGCGAKMVIVLLRgTMKYRVHDLALEHNHEL 79
                    7********9998.8888****************9999.999*****************99998****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MGFSVRKDYL NKDKDGMTTS KRYSCCKEGV KRKYEGDVMP KRTRAPTKTG CGAKMVIVLL  60
RGTMKYRVHD LALEHNHELH IAQCSHMMPS QIKVSEAQGF QAEISEDAGL SLKQSHELMG  120
KEAGGMENVG YTREDLKRYL RTRRERNLKY GEEGKIMIFG AALMYDETID SFKWVFGTFL  180
EAMCGKRPST ILTDQDHDMA VTLSVVLPET FHGLCTFHIT HNFMKHLGNH YKENSDLPYM  240
FGACLYAIEK VEQFNRLWEA MVKKYNLENN EWLSGLYRIR DK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.15e-21FAR1 family protein