PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027088788.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 328aa    MW: 36453.9 Da    PI: 8.6294
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027088788.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.64.2e-15280975
        trihelix  9 aLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75
                    +Liea+r ++er  +++             ++ +W++v +++++ g+ rs++qC++kw+nl +++kk++e e++ ++ +
  XP_027088788.1  2 VLIEAKRMDDERRMKRQgdsvggekpggkPAELRWKWVEDYCWRNGCLRSQNQCNDKWDNLMRDFKKVREYERRLADHQ 80
                    7999999777776654334555555665599*****************************************9974433 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MVLIEAKRMD DERRMKRQGD SVGGEKPGGK PAELRWKWVE DYCWRNGCLR SQNQCNDKWD  60
NLMRDFKKVR EYERRLADHQ QQLITIGESS SERERSDEKS YWKLEKNERK ANNLPSNLLP  120
QIYDALVEVV EKKVQRGSVV GLVGAGGTTA SIPNVPPSSA AALVGQPSSL PPSMQHLPIS  180
PPVSALPLPP PVVAQTPVQQ QQQHPHTHPF SQQLPTVDSD TSEHSDSPAK RRRRGEGTSG  240
GASGSESHEV GTAISRSASV IAETIQACEE REERRHRELL SLHERRLQIE ESKAEISRQG  300
INGLVDAVNK LANSILALAS HKTQSTPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.19e-48Trihelix family protein